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Research Scientist II H-1B Salary in San Diego, CA

Employers have filed 198 certified H-1B Labor Condition Applications for Research Scientist II positions in San Diego, CA, with a median salary of $125,000. That's 1% lower than the national Research Scientist II H-1B median of $126,684 across all U.S. locations, and 4% higher than the San Diego, CA all-roles H-1B median of $120,000. Research Scientist II ranks #19 among H-1B job titles filed from San Diego, CA.

Headline numbers for Research Scientist II H-1B roles in San Diego, CA, sourced from certified DOL Labor Condition Applications. This pair ranks #1,542 by filing volume out of the 6,873 job × city combinations we track — in the top quartile for Research Scientist II hiring.

$125,000
Median Salary
198
Certified Filings
$85,000
10th Percentile
$171,000
90th Percentile

Research Scientist II H-1B Salary Range in San Diego, CA

The pay distribution for this role spans $86,000 from the 10th to 90th percentile. Half of all offers fall between $102,000 and $155,000, the interquartile range where most experienced Research Scientist IIs land. The median of $125,000 sits 1% lower than the national Research Scientist II H-1B median.

10th percentile
$85,000
25th percentile
$102,000
Median
$125,000
75th percentile
$155,000
90th percentile
$171,000
Middle 50% of Research Scientist II H-1B salaries in San Diego, CA: $102,000 to $155,000

Top Employers Hiring Research Scientist IIs in San Diego, CA

AMAZON is the largest H-1B sponsor for Research Scientist II in San Diego, CA, with 84 certified filings (42% of local Research Scientist II H-1B filings) at a median salary of $157,300. The pay spread across top employers is 57%, so which employer you work for materially affects your offer.

Median Salary Comparison
AMAZON
$157,300
TUSIMPLE
$110,136
ILLUMINA
$99,944
GENOMATICA
$117,512

Pay spread among top employers: 57% ($99,944 at ILLUMINA to $157,300 at AMAZON)

Employer Filings Median Salary
AMAZON 84 $157,300
TUSIMPLE 25 $110,136
ILLUMINA 19 $99,944
GENOMATICA 6 $117,512
TAKEDA DEVELOPMENT CENTER AMERICAS 4 $137,000

How This Salary Compares

Two benchmarks worth knowing. The first is the national Research Scientist II H-1B median across every U.S. location — a measure of how local cost-of-living and market demand shift pay up or down. The second is the all-roles H-1B median in San Diego, CA, which tells you whether Research Scientist II pays above or below the typical H-1B job in this metro.

vs. National Research Scientist II
-1%
1% lower than the national Research Scientist II H-1B median of $126,684.
vs. San Diego, CA Average
+4%
4% higher than the overall H-1B median in San Diego, CA ($120,000).

Research Scientist II H-1B Salaries in Other Cities

The other top metros where Research Scientist II is an active H-1B role. Seattle, WA has the most filings (1,087) outside San Diego, CA. The highest median among these is Santa Clara, CA at $185,000. Click any city below for local salary percentiles and top sponsoring employers.

City Filings Median Salary
Seattle, WA 1,087 $157,000
Cambridge, MA 437 $115,828
New York, NY 350 $175,000
Sunnyvale, CA 343 $180,274
Bellevue, WA 258 $165,000
Palo Alto, CA 235 $183,500
Salt Lake City, UT 191 $58,344
Santa Clara, CA 179 $185,000
Boston, MA 176 $125,000
Atlanta, GA 142 $88,000

Other H-1B Jobs in San Diego, CA

The most common H-1B specialty occupations filed from San Diego, CA, ranked by certified filing volume. Software Engineer is the busiest non-Research Scientist II role here (2,661 filings). The highest-paying role on this list is Staff Software Engineer at a median of $146,328.

Job Title Filings Median Salary
Software Engineer 2,661 $122,720
Senior Software Engineer 1,640 $121,597
Staff Software Engineer 1,404 $146,328
QA Engineer 753 $96,742
Senior QA Engineer 606 $111,322
Software Developer 524 $111,322
Staff QA Engineer 448 $133,370
Software Engineer II 352 $128,502
Senior Asics Engineer 348 $108,930
Systems Engineer 315 $108,766

Key Insights

The median H-1B salary for Research Scientist II in San Diego, CA is $125,000, based on 198 certified Labor Condition Applications filed with the U.S. Department of Labor. This is 1% lower than the national Research Scientist II H-1B median of $126,684 across all U.S. locations. It is also 4% higher than the overall H-1B median of $120,000 in San Diego, CA across all job titles.

Salaries span a $86,000 range from the 10th percentile ($85,000) to the 90th percentile ($171,000). The middle 50% of workers earn between $102,000 and $155,000, reflecting variation in experience, specific technical skills, and employer tier.

AMAZON is the largest H-1B sponsor for this role in San Diego, CA, with 84 certified filings at a median salary of $157,300. The pay spread across top employers is 57%, so which employer you work for meaningfully affects your offer.

Frequently Asked Questions

The most common questions people ask about Research Scientist II H-1B roles in San Diego, CA, answered directly from 198 certified Labor Condition Applications filed with the U.S. Department of Labor. Every answer below cites the specific data point it's based on.

What is the average Research Scientist II salary in San Diego, CA?

The median H-1B salary for Research Scientist II positions in San Diego, CA is $125,000, based on 198 certified Labor Condition Applications (LCAs) filed with the U.S. Department of Labor.

10th percentile
$85,000
25th percentile
$102,000
Median
$125,000
75th percentile
$155,000
90th percentile
$171,000

The salary distribution for Research Scientist II roles in San Diego, CA shows considerable range: the 10th percentile earns $85,000, while the 90th percentile earns $171,000. This $86,000 spread reflects differences in experience levels, specific technical skills, company size, and seniority.

Compared to the national H-1B median of $130,541, Research Scientist II salaries in San Diego, CA are 4% lower, reflecting the local cost of living and market demand for this role.

Which companies hire Research Scientist IIs in San Diego, CA?

The top employers sponsoring H-1B visas for Research Scientist II positions in San Diego, CA are:

AMAZON
$157,300
TUSIMPLE
$110,136
ILLUMINA
$99,944
GENOMATICA
$117,512

These employers represent the largest H-1B sponsors for Research Scientist II roles specifically in San Diego, CA. AMAZON leads with 84 filings at a median salary of $157,300. Compensation varies by employer, ranging from $99,944 to $157,300.

How do I get an H-1B visa as a Research Scientist II in San Diego, CA?

To obtain an H-1B visa as a Research Scientist II in San Diego, CA, you'll need a sponsoring employer. The process involves several steps:

1
Job Offer
2
LCA Filed
3
H-1B Petition
4
Approved
  1. Secure a job offer from a U.S. employer willing to sponsor your H-1B visa
  2. The employer files a Labor Condition Application (LCA) with the Department of Labor
  3. Once the LCA is certified, the employer files an H-1B petition with USCIS
  4. If selected in the H-1B lottery (if applicable) and approved, you can begin work

Based on our data, 198 H-1B positions for Research Scientist IIs in San Diego, CA have been certified, indicating strong demand for this role. The top sponsors listed above have a track record of successful H-1B sponsorship for this position.